E-commerce Bookkeeping for Shopify, Amazon & Online Sellers
We help online businesses keep accurate financial records, track profitability across platforms, and stay tax-ready.
Supporting growing e-commerce businesses with modern cloud accounting.

E-commerce bookkeeping that scales with your business
See how JK Cloud Ledger builds structured financial systems for Shopify, Amazon and multi-channel e-commerce brands.
Multiple Sales Platforms
Sales happening across Shopify, Amazon, and eBay make tracking revenue difficult.
Marketplace Fees
Platform fees, transaction costs, and advertising spend reduce visibility of real profit.
Sales Tax Complexity
Different states and regions have different tax requirements.
Inventory Tracking
Understanding cost of goods sold and stock levels requires proper bookkeeping systems.
Why E-commerce Accounting Gets Complicated
Without a structured accounting system, e-commerce finances quickly become confusing.
What We Handle for Your Online Business
Platform Integration
Connect Shopify, Amazon, eBay, Stripe, and PayPal.
Inventory Tracking
Track cost of goods sold and stock movement.
Sales Tax Compliance
Maintain tax-ready records for multi-state sales.
Payment Reconciliation
Match platform payouts with bank transactions.
Financial Reporting
Monthly profit and performance reports.
Cash Flow Management
Understand how your store is performing financially.
Expense Tracking
Monitor and control your expenses with precision
Bookkeeping for Leading E-commerce Platforms
Shopify Sellers
Track orders, fees, refunds, and payment gateway transactions.
Amazon Sellers
Handle FBA settlement reports, referral fees, and advertising costs.
eBay Sellers
Track listings, payment processing, and seller fees.
Multi-Channel Sellers
Centralize accounting across multiple marketplaces.
Understand your profit margins by product or platform
Track cash flow and expenses
Stay tax-compliant year-round
Make data-driven decisions for scaling
Be audit-ready at any time
Why Bookkeeping Matters in E-commerce
Good bookkeeping is more than just organizing numbers—it's the key to running a healthy online business. Whether you're a solo seller or managing a growing team, accurate financials help you:
Shopify Bookkeeping that Keeps Your StoreFinancially Accurate
Selling on Shopify is easy. Keeping the accounting accurate is not.Shopify payouts, fees, refunds, taxes, and shipping income all need to be categorized correctly to understand real profit.
Automatically syncing your sales, fees, and payouts into QuickBooks
Sales tax tracking by region or country
Tracking shipping income, discounts, and taxes separately
Reconciling Shopify Payments and third-party processors like PayPal
Matching inventory costs with sales for accurate COGS reporting
We use tools like A2X or Link My Books to ensure every transaction is captured and categorized properly—so your Shopify data flows cleanly into your books.
What happens when you join JK Cloud Ledger
Same revenue — completely different visibility. We expose every hidden fee, reconcile every payout, and reveal your real profit for the first time.Revenue growth — 8 months
↑ All metrics accelerate after joining JK Cloud LedgerStore
Engine
Online
Reports
Year-round
Amazon Bookkeeping Mastering High-Volume Sales
If you’re selling on Amazon (FBA or FBM), you know how complex the fee structure can be. Between storage fees, referral fees, advertising costs, and sales tax, it’s easy to lose track.Our Amazon bookkeeping services help you
Break down Amazon settlement reports into individual accounting entries
Categorize revenue, refunds, FBA fees, and COGS
Track inventory and match it with Amazon’s fulfillment reports
Monitor ad spend and returns in one central dashboard
We automate the heavy lifting using A2X for Amazon, ensuring every deposit and fee is accurately reflected in QuickBooks.
Without JK Cloud Ledger, you'd record this as revenue — and overstate income.
Revenue growth — 8 months
↑ Real margin visible after JK Cloud Ledger decoded feesSeller
Engine
Online
product
Year-round
eBay Bookkeeping: Clean Records for Every Sale
eBay sellers, whether you’re flipping items or managing a full-scale resale business, need clean records for every transaction. Our eBay bookkeeping includes
Importing eBay sales and payment data via PayPal or eBay Managed Payments
Separating final value fees, PayPal fees, shipping, and taxes
Managing returns, inventory purchases, and promotions
Reconciliation of eBay payouts with your bank deposits
We’ll ensure you never miss a transaction and that every dollar is accounted for.
Clean records for every eBay sale — automatically
We import your eBay sales and payment data, separate every fee type, reconcile payouts to your bank, and give you books that are always audit-ready.Revenue growth — 8 months
↑ Every dollar tracked after joining JK Cloud LedgerStore
Payments
Books
Online
Year-round
QuickBooks Online: The Hub for Your E-commerce Accounting
QuickBooks Online (QBO) is our go-to solution for managing e-commerce finances. It offers robust features to centralize all your transactions, including:
Bank & payment gateway integrations (Stripe, PayPal, credit cards)
Sales tax tracking by region or country
Inventory and cost of goods sold (COGS) tracking
Custom reporting (P&L, Balance Sheet, Cash Flow)
Seamless integration with Shopify, Amazon, eBay, and more via apps
We’ll help you set up and maintain QBO so you always know where your business stands— no guesswork, no surprises.
Multi-Channel Bookkeeping: One System for All Your Platforms
Selling across multiple channels like Shopify, Amazon, and eBay? We can bring all your data together into one clean bookkeeping system.
Centralizing all sales and expenses in QuickBooks Online
Using advanced tools (A2X, Link My Books, TaxJar) for seamless automation
Customizing your chart of accounts by platform
Reconciling payments from Stripe, PayPal, and other processors
Managing sales tax collection across states and countries
Managing sales tax collection across states and countries
Tracking inventory and COGS accurately
Let us simplify your complex bookkeeping—so you can focus on what you do best: selling.
Why E-commerce Sellers Work With Us
We’re not just bookkeepers—we’re e-commerce accounting specialists. Our team understands the unique nature of your business and provides:
Certified QuickBooks Online Pro Advisor support
Deep experience with Shopify, Amazon, and eBay sellers
Tax-ready books and clean monthly reports
Personalized support tailored to your growth goals
Simplify Your E-commerce Bookkeeping
Let our experts handle your books while you focus on growing your store.
Whether you're a small seller or scaling to 7 figures, we’ve got the tools, team, and experience to keep your financials in check.
FAQ
Yes! We specialize in e-commerce bookkeeping catch-up and clean-up projects.
Absolutely. We work with clients around the world, and we’re familiar with multi-currency accounting.
Our pricing is based on transaction volume, platforms used, and services required. Get in touch for a custom quote.
We partner with tax professionals and can either file for you or prepare everything for your CPA.
